Difference between revisions of "Software:mrtrix"

Revision as of 18:17, 30 May 2016 (view source) Hasch (Talk | contribs) (Created page with "== LAMMPS (Large-scale Atomic/Molecular Massively Parallel Simulator) == {| style="border-spacing: 8px;" LAMMPS is a classical molecular dynamics code. It has potentials for...")		Revision as of 18:19, 30 May 2016 (view source) Hasch (Talk | contribs) Newer edit →
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−	== LAMMPS (Large-scale Atomic/Molecular Massively Parallel Simulator) ==	+	== Mrtrix ==
	{|  style="border-spacing: 8px;"		{|  style="border-spacing: 8px;"
−	LAMMPS is a classical molecular dynamics code. It has potentials for solid-state materials (metals, semiconductors) and soft matter (biomolecules, polymers) and coarse-grained or mesoscopic systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the atomic, meso, or continuum scale. LAMMPS runs on single processors or in parallel using message-passing techniques and a spatial-decomposition of the simulation domain. The code is designed to be easy to modify or extend with new functionality.	+	MRtrix3 provides a set of tools to perform various types of diffusion MRI analyses, from various forms of tractography through to next-generation group-level analyses. It is designed with consistency, performance, and stability in mind, and is freely available under an open-source license. It is developed and maintained by a team of experts in the field, fostering an active community of users from diverse backgrounds.
−		+	* '''Version''': 3
−	* '''Current Version''': 1 Dec 2013	+	* '''Platform/Cluster''': Linux / SW
−	* '''Platform/Cluster''': SW / Linux	+	* '''Location''':  /opt/mrtrix/mrtrix3
−	* '''Location''':  /opt/lammps	+	* '''Related link''': For more information go to the [http://www.mrtrix.org/ Official Mrtrix page].
−	* '''Related link''': For more information go to [http://lammps.sandia.gov/ The official LAMMPS webpage]	+	* '''Documentation''': Documentation is [http://mrtrix.readthedocs.org/en/latest/ Online.]
−	* '''Documentation''': Documentation in html format for the latest version [http://lammps.sandia.gov/doc/Manual.html can be accessed here].	+	* '''License''': FSL is distributed under the [https://www.mozilla.org/en-US/MPL/2.0/ Mozilla Public License]
		+	* '''Other help''': The documentation includes several tutorials.
	|}		|}
	* '''Related Software''':		* '''Related Software''':
−	: [[Software:adf|ADF]]	+	: [[Software:freesurfer|FreeSurfer]]
−	: [[Software:amber|Amber]]	+	: [[Software:fsl|FSL]]
−	: [[Software:gamess|Gamess]]	+	: [[Software:paraview|ParaView]]
−	: [[Software:namd|NAMD]]	+
−	: [[Software:cpmd|Car-Parinello Molecular Dynamics]]	+
−	: [[Software:nwchem|NWChem]]	+

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Revision as of 18:19, 30 May 2016

Mrtrix

MRtrix3 provides a set of tools to perform various types of diffusion MRI analyses, from various forms of tractography through to next-generation group-level analyses. It is designed with consistency, performance, and stability in mind, and is freely available under an open-source license. It is developed and maintained by a team of experts in the field, fostering an active community of users from diverse backgrounds.

• Version: 3
• Platform/Cluster: Linux / SW
• Location: /opt/mrtrix/mrtrix3
• Related link: For more information go to the Official Mrtrix page.
• Documentation: Documentation is Online.
• License: FSL is distributed under the Mozilla Public License
• Other help: The documentation includes several tutorials.

• Related Software:

FreeSurfer

FSL

ParaView