Difference between revisions of "Software:mrtrix"

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(Created page with "== LAMMPS (Large-scale Atomic/Molecular Massively Parallel Simulator) == {| style="border-spacing: 8px;" LAMMPS is a classical molecular dynamics code. It has potentials for...")
 
 
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== LAMMPS (Large-scale Atomic/Molecular Massively Parallel Simulator) ==
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== Mrtrix ==
 
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LAMMPS is a classical molecular dynamics code. It has potentials for solid-state materials (metals, semiconductors) and soft matter (biomolecules, polymers) and coarse-grained or mesoscopic systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the atomic, meso, or continuum scale. LAMMPS runs on single processors or in parallel using message-passing techniques and a spatial-decomposition of the simulation domain. The code is designed to be easy to modify or extend with new functionality.
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MRtrix3 provides a set of tools to perform various types of diffusion MRI analyses, from various forms of tractography through to next-generation group-level analyses. It is designed with consistency, performance, and stability in mind, and is freely available under an open-source license. It is developed and maintained by a team of experts in the field, fostering an active community of users from diverse backgrounds.
* '''Current Version''': 1 Dec 2013
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* '''Version''': 3
* '''Platform/Cluster''': SW / Linux
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* '''Location''':  /opt/mrtrix/mrtrix3
* '''Location''':  /opt/lammps
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* '''Related link''': For more information go to the [http://www.mrtrix.org/ Official Mrtrix page].
* '''Related link''': For more information go to [http://lammps.sandia.gov/ The official LAMMPS webpage]
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* '''Documentation''': Documentation is [http://mrtrix.readthedocs.org/en/latest/ Online.]
* '''Documentation''': Documentation in html format for the latest version [http://lammps.sandia.gov/doc/Manual.html can be accessed here].
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* '''License''': FSL is distributed under the [https://www.mozilla.org/en-US/MPL/2.0/ Mozilla Public License]
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* '''Other help''': The documentation includes several tutorials.
 
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* '''Related Software''':  
 
* '''Related Software''':  
: [[Software:adf|ADF]]
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** [[Software:freesurfer|FreeSurfer]]
: [[Software:amber|Amber]]
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** [[Software:fsl|FSL]]
: [[Software:gamess|Gamess]]
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** [[Software:paraview|ParaView]]
: [[Software:namd|NAMD]]
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: [[Software:cpmd|Car-Parinello Molecular Dynamics]]
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: [[Software:nwchem|NWChem]]
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Latest revision as of 19:43, 30 May 2016

Mrtrix

MRtrix3 provides a set of tools to perform various types of diffusion MRI analyses, from various forms of tractography through to next-generation group-level analyses. It is designed with consistency, performance, and stability in mind, and is freely available under an open-source license. It is developed and maintained by a team of experts in the field, fostering an active community of users from diverse backgrounds.

  • Version: 3
  • Location: /opt/mrtrix/mrtrix3
  • Related link: For more information go to the Official Mrtrix page.
  • Documentation: Documentation is Online.
  • License: FSL is distributed under the Mozilla Public License
  • Other help: The documentation includes several tutorials.