Difference between revisions of "Software:blast"

Revision as of 14:32, 30 May 2016 (view source) Hasch (Talk | contribs) (→‎Blast) ← Older edit		Revision as of 19:35, 30 May 2016 (view source) Hasch (Talk | contribs) Newer edit →
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−	== Blast ==	+	== Root ==
	{|  style="border-spacing: 8px;"		{|  style="border-spacing: 8px;"
−	BLAST is one of the most widely used bioinformatics programs for sequence searching. It addresses a fundamental problem needed in bioinformatics research. The heuristic algorithm it uses is much faster than other approaches, such as calculating an optimal alignment. This emphasis on speed is vital to making the algorithm practical on the huge genome databases currently available, although subsequent algorithms can be even faster.	+	A modular scientific software framework. It provides all the functionalities needed to deal with big data processing, statistical analysis, visualisation and storage. It is mainly written in C++ but integrated with other languages such as Python and R.
−	* '''Version''':  2.2.30 (NCBI)	+	* '''Version''':  5.34.20
−	* '''Location''':  /opt/blast	+	* '''Location''':  /opt/ROOT
−	* '''Related link''': [http://blast.ncbi.nlm.nih.gov/Blast.cgi Blast Home Page at the National Center for Biotechnology Information]	+	* '''Related link''': [https://root.cern.ch/ Root Home Page at CERN]
−	* '''Instructional Videos''': [https://www.youtube.com/playlist?list=PLH-TjWpFfWrtjzMCIvUe-YbrlIeFQlKMq Yes, it's on YouTube]	+	* '''Documentation''': [https://root.cern.ch/guides/reference-guide Reference Guide] and [https://root.cern.ch/root/htmldoc/guides/users-guide/ROOTUsersGuide.html User's Guide] are online.
−	* '''Documentation''': [http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs Blast Documentation covering software and databases]	+	* '''Additional Help''': [https://root.cern.ch/phpBB3/ An Online Forum]
	|}		|}
	* '''Related Software''':		* '''Related Software''':
−	** [[Software:autodock|Autodock]]	+	** ???
−	** [[Software:pyrx|PyRx]]	+
−	** [[Software:gromacs|Gromacs]]	+
−	** [[Software:amber|Amber]]	+
−	** [[Software:cpmd|CPMD]]	+

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Revision as of 19:35, 30 May 2016

Root

A modular scientific software framework. It provides all the functionalities needed to deal with big data processing, statistical analysis, visualisation and storage. It is mainly written in C++ but integrated with other languages such as Python and R.

• Version: 5.34.20
• Location: /opt/ROOT
• Related link: Root Home Page at CERN
• Documentation: Reference Guide and User's Guide are online.
• Additional Help: An Online Forum

• Related Software:
  •  ???