View source for Support:Helpfiles

* [[HowTo:Access|Accessing the Systems]]: Using SSH to get onto our systems
* [[HowTo:abaqus|Abaqus]]: Finite-Element Analysis (FEA) code
* [[HowTo:adf|ADF]]: Amsterdam Density Functional code (computational chemistry)
* [[HowTo:adina|Adina]]: Automatic Dynamic Incremental Non-linear Analysis (finite element)
* [[HowTo:autodock|AutoDock]]: Suite of Automated Docking tools
* [[HowTo:comsol|COMSOL Multiphysics]]: Simulation Tool for Electrical, Mechanical, Fluid Flow, and Chemical Applications
* [[HowTo:fluent|Fluent]]: Computational Fluid Dynamics code 
* [[HowTo:fortran|Fortran]]: A brief introduction 
* [[HowTo:cpmd|CPMD]]: Carr-Parinello Molecular Dynamics (quantum-classical MD) 
* [[HowTo:Compilers|Compilers]]: How to compile your code on our systems (GNU and Intel compilers)
* [[HowTo:gaussian|Gaussian]]: Electronic Structure / Computational Chemistry code
* [[HowTo:gamess|Gamess]]: General Atomic and Molecular Electronic Structure System
* [[Software:matlab|MATLAB]]: High-level Technical Computing Language and Interactive Environment  
* [[HowTo:Migrate|Migration]]: Moving from Sparc/Solaris/M9000 to x86/Linux/SW
* [[HowTo:mpi|MPI]]: Compiler Directives for shared-memory parallel programming
* [[HowTo:namd|NAMD]]: Parallel Code for Molecular Dynamics Simulation of Large Biomolecules
* [[HowTo:nwchem|NWChem]]: High-Performance Electronic Structure code
* [[HowTo:openmp|OpenMP]]: Compiler Directives for shared-memory parallel programming
* [[HowTo:pyrx|PyRx]]: Virtual Screening Software for Computational Drug Discovery
* [[HowTo:Password|Passwords]]: Using and Changing Passwords
* [[HowTo:petsc|PETSc|]]: Data Structures and Routines for Parallel Solution of Partial Differential Equations
* [[HowTo:Scheduler|Running Jobs]]: Using the Grid Engine scheduler to run jobs on our clusters